PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 310aa    MW: 32727.8 Da    PI: 9.838
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27730genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07166207240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      g WT +E ell +   +++ g   +W++Ia  +g +Rt++++
         EMT27730 166 GEWTDQEMELLRRQMLKHPAGepqRWEKIATVFGGRRTPESV 207
                      78********************************99999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.055164217IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-5166201IPR009057Homeodomain-like
PfamPF002491.3E-5166208IPR001005SANT/Myb domain
PROSITE profilePS500905.97166207IPR017877Myb-like domain
SuperFamilySSF466892.39E-7166209IPR009057Homeodomain-like
CDDcd001671.60E-5167209No hitNo description
SMARTSM007171.6E-4251303IPR001005SANT/Myb domain
SuperFamilySSF466892.17E-9252300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-5253300IPR009057Homeodomain-like
PfamPF002495.3E-6253296IPR001005SANT/Myb domain
PROSITE profilePS500906.864253301IPR017877Myb-like domain
CDDcd001671.01E-5255301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEFIDDAWAS QPRARVVHSR ADAAANSSSP TANPASRSLP HVAACAAAAV LLLAAAYSRD  60
SAYQVFASIL VWIASSLLLA PFAPSSATGG DISVGRGSLL PDQEPSQEPT PDPIAPSRRG  120
RRQNAAPPPP KSSDPVAPPV QPPPRRQEAM GAGTAVLDGV EREEVGEWTD QEMELLRRQM  180
LKHPAGEPQR WEKIATVFGG RRTPESVIRA AKSGGAAAAG GSFEQFLRKR KPLDPRAGAA  240
DADTGGNAGG GDGGWSAGED RSLLNALKEF PKDTAMRWEK VAAAVPGKTK AGCMKRVTEL  300
KRDFRSSKEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231LRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519380.0JF951938.1 Aegilops speltoides clone TaMYB55 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573464.11e-133PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLM8BRX40.0M8BRX4_AEGTA; DnaJ homolog subfamily C member 2
STRINGBRADI3G16420.11e-133(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.16e-40MYB_related family protein